[1] P. J. Hoogerbrugge and J. M. V. A. Koelman, Simulating Microscopic Hydrodynamic Phenomena with Dissipative Particle Dynamics, Europhys. Lett. 19 (1), 155 (1992).
[2] P. Español and P. Warren, Statistical mechanics of dissipative particle dynamics, Europhys. Lett. 30, 191 (1995).
[3] C. Marsh, G. Backx, and M. H. Ernst, The Fokker-Planck- Boltzmann equation for dissipative particle dynamics, Europhys. Lett. 38, 441 (1997).
[4] N. S. Martys and R. D. Mountain, Velocity Verlet algorithm for dissipative-particle-based models of suspensions, Phys. Rev. E 59 (3), 3733 (1999).
[5] L. Verlet, Computer "experiments" on classical fluids. I. thermodynamical properties of lennard-jones molecules, Phys. Rev. 165, 201 (1967).
[6] I. Omelyan, On the numerical integration of motion for rigid polyatomics: the modified quaterion approach, Computer Phys. 12, 97 (1998).
[7] J. M. V. A. Koelman and P. J. Hoogerbrugge, Dynamic Simulation of hard sphere suspensions under steady shear, Europhys. Lett. 21 (1), 363 (1993).
[8] M. P. Allen and D. J. Tildesley, Computer simulation of liquids, Clarendon Press, Oxford (1987).
[9] B. Quentrec and C. Brot, New methods for searching for neighbours in molecular dynamics computations, J. Comput. Phys. 13, 430 (1973).
[10] M. Pinches, D. Tildesley, and W. Smith, Large scale molecular dynamics on parallel computers using the link-cell algorithm, Mol. Simul. 6, 51 (1991).
[11] J. S. Sims, J. G. Hagedorn, P. M. Ketcham, S. G. Satterfield, T. J. Griffin,W. L. George, H. A. Fowler, B. A. am Ende, H. K. Hung, R. B. Bohn, J. E. Koontz, N. S. Martys, C. E. Bouldin, J. A. Warren, D. L. Feder, C. W. Clark, B. J. Filla, and J. E. Devaney, Accelerating scientific discovery through computation and visualization, NISTIR 6709 (2001) p. 1.
[12] Collaborative Computational Projects (online), http://www.dl.ac.uk/CCP
, Accessed March 2004.[13] Message Passing Interface Forum, MPI: A message passing interface standard, Int. J. Supercomput. Appl. 8 (3/4), 159 (1994).
[14] J. S. Sims, J. G. Hagedorn, P. M. Ketcham, S. G. Satterfield, T. J. Griffin, W. L. George, H. A. Fowler, B. A. am Ende, H. K. Hung, R. B. Bohn, J. E. Koontz, N. S. Martys, C. E. Bouldin, J. A. Warren, D. L. Feder, C. W. Clark, B. J. Filla, and J. E. Devaney, Accelerating scientific discovery through computation and visualization, J. Res. Natl. Inst. Stand. Technol. 105, 875 (2000).
[15] W. Smith, Areplicated-data molecular dynamics strategy for the parallel Ewald sum, Comput. Phys. Commun. 67, 392 (1992).
[16] S. J. Plimpton, Fast Parallel Algorithms for Short-Range Molecular Dynamics, J. Comput. Phys. 117, 1 (1995).
[17] S. J. Plimpton, R. Pollock, and M. Stevens, Particle-Mesh Ewald and rRESPA for Parallel Molecular Dynamics Simulations, Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, March 1997.
[18] W. Gropp, E. Lusk, and A. Skjellum, Using MPI (2nd edition), The MIT Press, Cambridge, Mass. (1999).